TestNloc.java

package nloc;

import java.util.List;
import java.util.ArrayList;
import java.util.ListIterator;
import java.util.Arrays;

public class TestNloc {


  public static void main(String[] args) {

    //Nloc nl = new Nloc(getNlocS5());
    List<Channel> chList = getNlocS5();
    Nloc nl = new Nloc(chList);
    //Pump pump = nl.getPump();
    //pump.setSteps(2);
    //Channel c1 = new Channel("ch1", 3, 5);
    //Sink s0 = new Sink();
    //Channel c2 = new Channel("ch2", 3, 5);
    //Module m0 = new Module("m0", 5,1);
    //c1.addChild(c2);
    //Droplet pld = new Droplet(DropletType.PAYLOAD, new Position(pump,1));
    //pld.setName("p");
    //Droplet hdr = new Droplet(DropletType.HEADER, new Position(pump,2));
    //hdr.setName("h");
    //
    //System.out.println(pld.coalesce());
    //
    //int normStep = hdr.getNormalizedSteps();

    //System.out.println("Normalized Steps: " + normStep);
    //nl.setDropletList(pump.getDropletList());

    //if (nl.simulate()) {
    //  System.out.println("Success!! Don't coalesce");
    //} else {
    //  System.out.println("Did coalesce!");
    //}

    List<List<Channel>> allPaths = nl.getAllPaths();
    List<Channel> critPath = allPaths.get(4);

    //try {
    //  String[] mtv = {"f2", "m3", "h0", "m5"};
    //  List<List<SequenceTuple>> posSeqs = nl.getPossibleSequences(mtv);
    //  //printSequences(posSeqs);
    //  System.out.println("DEBUG:");
    //  Pump p0 = nl.getShortestSequence(mtv);
    //  printPumpcontents(p0);

    //} catch (Exception e) {
    //  System.out.println(e.getMessage());
    //}
    //printPaths(allPaths);

    //int count = 0;
    //for (List<Channel> path: allPaths) {

      String[] modulesToVisit = extractModuleStringArrayFromPath(critPath);

      System.out.println("Modules to visit: ");
      for (String str: modulesToVisit) {
        System.out.print(str + " " );
      }
      try {
        List<List<SequenceTuple>> seTupList = nl.getPossibleSequences(modulesToVisit);
        printSequences(seTupList);
      } catch (Exception e) {
        System.out.println(e.getMessage());
      }

      //System.out.println("Pathnum: " + count++);
      //Pump p = nl.getShortestSequence(modulesToVisit);
      //printPumpcontents(p);
    //}

  }

  public static void printPumpcontents(Pump pump) {
    List<Droplet> drlist = pump.getDropletList();
    for (Droplet dr: drlist) {
      System.out.print("Droplet: " + dr.getName() + " Pos: " + dr.getPosition().getSteps() + " Outlet: " + dr.getPumpOutlet().getName());
      if (drlist.indexOf(dr) == drlist.size() - 1) {
        System.out.println("");
      } else {
        System.out.print(" | ");
      }
    }
    System.out.println("");

  }
  public static String[] extractModuleStringArrayFromPath(List<Channel> path) {
    List<String> strlist = new ArrayList<String>();
    for (Channel ch: path) {
      if (ch instanceof Module) {
        strlist.add(ch.getName());
      }
    }
    return strlist.toArray(new String[strlist.size()]);
  }

  public static void printSequence(List<SequenceTuple> seq) {
    for (SequenceTuple stup: seq) {
      if (seq.indexOf(stup) == (seq.size() - 1)) {
        System.out.print(stup.getDroplet().getName() + ": " + stup.getMinPos() +
            ":" + stup.getMaxPos() + " : " + stup.getPath().get(1).getName());
      } else { 
        System.out.print(stup.getDroplet().getName() + ": " + stup.getMinPos() +
            ":" + stup.getMaxPos() + " : " + stup.getPath().get(1).getName() + " -> ");
      }
    }
    System.out.println("\n");
  }

  public static void printSequences(List<List<SequenceTuple>> sequences) {
    System.out.println("##################");
    System.out.println("# " + sequences.size() + " Sequences Found");
    System.out.println("##################");
    System.out.println("");
    for (List<SequenceTuple> sl: sequences) {
      printSequence(sl);
    }
  } 

  public static void printPath(List<Channel> path) {
    System.out.println("Pathlength Payload: " + Nloc.getPayloadPathlength(path));
    System.out.println("Pathlength Header: " + Nloc.getHeaderPathlength(path));
    for (Channel ch : path) {
      if (path.indexOf(ch) == (path.size() - 1)) {
        System.out.print(ch.getName());
      } else {
        System.out.print(ch.getName() + " -> ");
      }
    }
    System.out.println("");
    System.out.println("");
  }

  public static void printPaths(List<List<Channel>> pathlist) {
    System.out.println("");
    System.out.println("#############################");
    System.out.println("# Number of paths found: " + pathlist.size());
    System.out.println("#############################");
    for (List<Channel> p : pathlist) {
      printPath(p);
    }
  }

  public static List<Channel> getNlocS1() {

    // channel(name, psteps, hsteps)
    Channel ch1 = new Channel("ch1",1,1);
    Channel ch2 = new Channel("ch2",1,1);
    Channel ch3 = new Channel("ch3",1,1);
    Channel ch4 = new Channel("ch4",1,1);
    Channel ch5 = new Channel("ch5",1,1);
    Channel ch6 = new Channel("ch6",1,1);
    Channel ch7 = new Channel("ch7",1,1);
    Channel ch8 = new Channel("ch8",1,1);
    Channel ch9 = new Channel("ch9",1,1);
    Channel ch10 = new Channel("ch10",1,1);
    Channel ch11 = new Channel("ch11",3,3);
    Channel ch12 = new Channel("ch12",1,1);
    Channel ch13 = new Channel("ch13",1,1);
    Channel ch14 = new Channel("ch14",1,1);
    Channel ch15 = new Channel("ch15",1,1);

    Module m0 = new Module("m0", 5,1);
    Module m1 = new Module("m1", 5,1);
    Module m2 = new Module("m2", 5,1);
    Module d1 = new Module("d1", 5,1);
    Module d2 = new Module("d2", 5,1);
    Module h1 = new Module("h1", 5,1);
    Module h2 = new Module("h2", 5,1);
    Module f2 = new Module("f2", 5,1);

    Pump p0 = new Pump();
    Sink s0 = new Sink();

    List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7, 
        ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, m0, m1, m2, d1, d2, h1, 
        h2, f2, p0, s0);

    p0.addChild(ch1);
    p0.addChild(ch2);
    p0.addChild(ch3);

    ch1.addChild(m2);
    m2.addChild(ch4);
    ch4.addChild(d2);
    d2.addChild(ch6);

    ch2.addChild(h2);
    h2.addChild(ch5);

    ch6.addChild(ch7);
    ch5.addChild(ch7);
    ch3.addChild(ch7);

    ch7.addChild(m1);
    m1.addChild(ch8);
    ch8.addChild(f2);
    f2.addChild(ch9);

    ch9.addChild(ch11);
    ch9.addChild(ch10);

    ch11.addChild(h1);
    h1.addChild(ch12);

    ch12.addChild(ch13);
    ch10.addChild(ch13);

    ch13.addChild(m0);
    m0.addChild(ch14);
    ch14.addChild(d1);
    d1.addChild(ch15);

    ch15.addChild(s0);
    return chlist;
  }

  public static List<Channel> getNlocS2() {

    // channel(name, psteps, hsteps)
    Channel ch1 = new Channel("ch1",1,1);
    Channel ch2 = new Channel("ch2",1,1);
    Channel ch3 = new Channel("ch3",1,1);
    Channel ch4 = new Channel("ch4",1,1);
    Channel ch5 = new Channel("ch5",1,1);
    Channel ch6 = new Channel("ch6",3,3);
    Channel ch7 = new Channel("ch7",1,1);
    Channel ch8 = new Channel("ch8",1,1);
    Channel ch9 = new Channel("ch9",1,1);
    Channel ch10 = new Channel("ch10",1,1);
    Channel ch11 = new Channel("ch11",1,1);
    Channel ch12 = new Channel("ch12",3,3);
    Channel ch13 = new Channel("ch13",1,1);
    Channel ch14 = new Channel("ch14",1,1);
    Channel ch15 = new Channel("ch15",1,1);
    Channel ch16 = new Channel("ch16",1,1);
    Channel ch17 = new Channel("ch17",3,3);
    Channel ch18 = new Channel("ch18",1,1);
    Channel ch19 = new Channel("ch19",1,1);
    Channel ch20 = new Channel("ch20",1,1);
    Channel ch21 = new Channel("ch21",3,3);
    Channel ch22 = new Channel("ch22",1,1);
    Channel ch23 = new Channel("ch23",1,1);
    Channel ch24 = new Channel("ch24",1,1);
    Channel ch25 = new Channel("ch25",3,3);
    Channel ch26 = new Channel("ch26",1,1);
    Channel ch27 = new Channel("ch27",1,1);
    Channel ch28 = new Channel("ch28",1,1);
    Channel ch29 = new Channel("ch29",1,1);
    Channel ch30 = new Channel("ch30",1,1);

    Module m0 = new Module("m0", 5,1);
    Module m1 = new Module("m1", 5,1);
    Module m2 = new Module("m2", 5,1);
    Module m3 = new Module("m3", 5,1);
    Module m4 = new Module("m4", 5,1);
    Module m5 = new Module("m5", 5,1);
    Module h0 = new Module("h0", 5,1);
    Module h3 = new Module("h3", 5,1);
    Module d1 = new Module("d1", 5,1);
    Module f2 = new Module("f2", 5,1);

    Pump p0 = new Pump();
    Sink s0 = new Sink();

    List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7, 
        ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18, ch19,
        ch20, ch21, ch22, ch23, ch24, ch25, ch26, ch27, ch28, ch29, ch30, m0, 
        m1, m2, m3, m4, m5, h0, h3, d1, f2, p0, s0);

    p0.addChild(ch1);
    p0.addChild(ch2);
    p0.addChild(ch3);
    p0.addChild(ch4);

    ch1.addChild(m4);
    m4.addChild(ch8);
    ch8.addChild(ch11);
    ch8.addChild(ch12);

    ch12.addChild(d1);
    d1.addChild(ch15);

    ch2.addChild(ch9);

    ch3.addChild(m2);
    m2.addChild(ch5);
    ch5.addChild(ch6);
    ch5.addChild(ch7);

    ch6.addChild(ch9);
    ch9.addChild(h3);
    h3.addChild(ch13);

    ch4.addChild(ch10);
    ch7.addChild(ch10);
    ch10.addChild(f2);
    f2.addChild(ch14);
    ch14.addChild(ch16);
    ch14.addChild(ch17);

    ch11.addChild(ch18);
    ch15.addChild(ch18);
    ch13.addChild(ch18);
    ch16.addChild(ch18);

    ch18.addChild(m1);
    m1.addChild(ch19);
    ch19.addChild(ch20);
    ch19.addChild(ch21);

    ch21.addChild(ch22);
    ch17.addChild(ch22);
    ch22.addChild(m3);
    m3.addChild(ch23);
    ch23.addChild(ch24);
    ch23.addChild(ch25);

    ch20.addChild(ch26);
    ch24.addChild(ch26);

    ch26.addChild(m0);
    m0.addChild(ch28);

    ch25.addChild(h0);
    h0.addChild(ch27);

    ch28.addChild(ch29);
    ch27.addChild(ch29);

    ch29.addChild(m5);
    m5.addChild(ch30);

    ch30.addChild(s0);
    return chlist;
  }

  public static List<Channel> getNlocS6() {

    // channel(name, psteps, hsteps)
    Channel ch1 = new Channel("ch1",1,1);
    Channel ch2 = new Channel("ch2",1,1);
    Channel ch3 = new Channel("ch3",1,1);
    Channel ch4 = new Channel("ch4",1,1);
    Channel ch5 = new Channel("ch5",3,3);
    Channel ch6 = new Channel("ch6",1,1);
    Channel ch7 = new Channel("ch7",1,1);
    Channel ch8 = new Channel("ch8",1,1);
    Channel ch9 = new Channel("ch9",1,1);
    Channel ch10 = new Channel("ch10",3,3);
    Channel ch11 = new Channel("ch11",1,1);
    Channel ch12 = new Channel("ch12",1,1);
    Channel ch13 = new Channel("ch13",1,1);
    Channel ch14 = new Channel("ch14",3,3);
    Channel ch15 = new Channel("ch15",1,1);
    Channel ch16 = new Channel("ch16",1,1);
    Channel ch17 = new Channel("ch17",1,1);
    Channel ch18 = new Channel("ch18",1,1);
    Channel ch19 = new Channel("ch19",1,1);
    Channel ch20 = new Channel("ch20",1,1);

    Module m0 = new Module("m0", 5,1);
    Module m1 = new Module("m1", 5,1);
    Module m3 = new Module("m3", 5,1);
    Module m4 = new Module("m4", 5,1);
    Module m5 = new Module("m5", 5,1);
    Module h0 = new Module("h0", 5,1);
    Module h3 = new Module("h3", 5,1);
    Module d1 = new Module("d1", 5,1);

    Pump p0 = new Pump();
    Sink s0 = new Sink();

    List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7, 
        ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18, ch19,
        ch20, m0, m1, m3, m4, m5, h0, h3, d1, p0, s0);

    p0.addChild(ch1);
    p0.addChild(ch2);

    ch2.addChild(h3);
    h3.addChild(ch4);

    ch1.addChild(m4);
    m4.addChild(ch3);

    ch3.addChild(ch5);
    ch3.addChild(ch6);

    ch5.addChild(d1);
    d1.addChild(ch7);

    ch7.addChild(ch8);
    ch6.addChild(ch8);
    ch4.addChild(ch8);

    ch8.addChild(m1);
    m1.addChild(ch9);
    ch9.addChild(ch10);
    ch9.addChild(ch11);

    ch10.addChild(ch12);
    ch12.addChild(m3);
    m3.addChild(ch13);

    ch13.addChild(ch14);
    ch13.addChild(ch15);

    ch14.addChild(h0);
    h0.addChild(ch16);

    ch15.addChild(ch17);
    ch11.addChild(ch17);

    ch17.addChild(m0);
    m0.addChild(ch18);

    ch16.addChild(ch19);
    ch18.addChild(ch19);

    ch19.addChild(m5);
    m5.addChild(ch20);

    ch20.addChild(s0);
    return chlist;
  }

  public static List<Channel> getNlocS7() {

    // channel(name, psteps, hsteps)
    Channel ch1 = new Channel("ch1",1,1);
    Channel ch2 = new Channel("ch2",1,1);
    Channel ch3 = new Channel("ch3",1,1);
    Channel ch4 = new Channel("ch4",1,1);
    Channel ch5 = new Channel("ch5",1,1);
    Channel ch6 = new Channel("ch6",1,1);
    Channel ch7 = new Channel("ch7",1,1);
    Channel ch8 = new Channel("ch8",3,3);
    Channel ch9 = new Channel("ch9",1,1);
    Channel ch10 = new Channel("ch10",1,1);
    Channel ch11 = new Channel("ch11",1,1);
    Channel ch12 = new Channel("ch12",3,3);
    Channel ch13 = new Channel("ch13",1,1);
    Channel ch14 = new Channel("ch14",1,1);
    Channel ch15 = new Channel("ch15",1,1);
    Channel ch16 = new Channel("ch16",1,1);
    Channel ch17 = new Channel("ch17",1,1);
    Channel ch18 = new Channel("ch18",1,1);

    Module m0 = new Module("m0", 5,1);
    Module m1 = new Module("m1", 5,1);
    Module m3 = new Module("m3", 5,1);
    Module m4 = new Module("m4", 5,1);
    Module m5 = new Module("m5", 5,1);
    Module h0 = new Module("h0", 5,1);
    Module h3 = new Module("h3", 5,1);
    Module d1 = new Module("d1", 5,1);

    Pump p0 = new Pump();
    Sink s0 = new Sink();

    List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7, 
        ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18, 
        m0, m1, m3, m4, m5, h0, h3, d1, p0, s0);

    p0.addChild(ch1);
    p0.addChild(ch2);

    ch2.addChild(h3);
    h3.addChild(ch4);

    ch1.addChild(m4);
    m4.addChild(ch3);

    ch3.addChild(d1);
    d1.addChild(ch5);

    ch5.addChild(ch6);
    ch4.addChild(ch6);

    ch6.addChild(m1);
    m1.addChild(ch7);

    ch7.addChild(ch8);
    ch7.addChild(ch9);

    ch8.addChild(ch10);
    ch10.addChild(m3);
    m3.addChild(ch11);

    ch11.addChild(ch12);
    ch11.addChild(ch13);

    ch13.addChild(ch15);
    ch9.addChild(ch15);

    ch12.addChild(h0);
    h0.addChild(ch14);

    ch15.addChild(m0);
    m0.addChild(ch16);

    ch14.addChild(ch17);
    ch16.addChild(ch17);

    ch17.addChild(m5);
    m5.addChild(ch18);

    ch18.addChild(s0);

    return chlist;
  }
  public static List<Channel> getNlocS3() {

    // channel(name, psteps, hsteps)
    Channel ch1 = new Channel("ch1",1,1);
    Channel ch2 = new Channel("ch2",1,1);
    Channel ch3 = new Channel("ch3",1,1);
    Channel ch4 = new Channel("ch4",1,1);
    Channel ch5 = new Channel("ch5",1,1);
    Channel ch6 = new Channel("ch6",1,1);
    Channel ch7 = new Channel("ch7",1,1);
    Channel ch8 = new Channel("ch8",1,1);
    Channel ch9 = new Channel("ch9",3,3);
    Channel ch10 = new Channel("ch10",1,1);
    Channel ch11 = new Channel("ch11",1,1);
    Channel ch12 = new Channel("ch12",1,1);
    Channel ch13 = new Channel("ch13",3,3);
    Channel ch14 = new Channel("ch14",1,1);
    Channel ch15 = new Channel("ch15",1,1);
    Channel ch16 = new Channel("ch16",3,3);
    Channel ch17 = new Channel("ch17",1,1);
    Channel ch18 = new Channel("ch18",1,1);
    Channel ch19 = new Channel("ch19",1,1);
    Channel ch20 = new Channel("ch20",1,1);
    Channel ch21 = new Channel("ch21",3,3);
    Channel ch22 = new Channel("ch22",1,1);
    Channel ch23 = new Channel("ch23",1,1);
    Channel ch24 = new Channel("ch24",1,1);
    Channel ch25 = new Channel("ch25",1,1);
    Channel ch26 = new Channel("ch26",1,1);
    Channel ch27 = new Channel("ch27",3,3);
    Channel ch28 = new Channel("ch28",1,1);
    Channel ch29 = new Channel("ch29",1,1);
    Channel ch30 = new Channel("ch30",1,1);
    Channel ch31 = new Channel("ch31",1,1);
    Channel ch32 = new Channel("ch32",1,1);
    Channel ch33 = new Channel("ch33",3,3);
    Channel ch34 = new Channel("ch34",1,1);
    Channel ch35 = new Channel("ch35",1,1);
    Channel ch36 = new Channel("ch36",1,1);

    Module m0 = new Module("m0", 5,1);
    Module m1 = new Module("m1", 5,1);
    Module m2 = new Module("m2", 5,1);
    Module m3 = new Module("m3", 5,1);
    Module m4 = new Module("m4", 5,1);
    Module m5 = new Module("m5", 5,1);

    Module h1 = new Module("h1", 5,1);
    Module h2 = new Module("h2", 5,1);
    Module h5 = new Module("h5", 5,1);

    Module d1 = new Module("d1", 5,1);
    Module d5 = new Module("d5", 5,1);

    Module f5 = new Module("f5", 5,1);

    Pump p0 = new Pump();
    Sink s0 = new Sink();

    List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7, 
        ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18, ch19,
        ch20, ch21, ch22, ch23, ch24, ch25, ch26, ch27, ch28, ch29, ch30, ch31,
        ch32, ch33, ch34, ch35, ch36, m0, m1, m2, m3, m4, m5, h1, h2, h5, d1, 
        d5, f5, p0, s0);

    p0.addChild(ch1);
    p0.addChild(ch2);
    p0.addChild(ch3);
    p0.addChild(ch4);
    p0.addChild(ch5);

    ch2.addChild(h1);
    h1.addChild(ch6);

    ch3.addChild(m0);
    m0.addChild(ch7);
    ch7.addChild(ch8);
    ch7.addChild(ch9);

    ch4.addChild(ch10);
    ch9.addChild(ch10);

    ch10.addChild(f5);
    f5.addChild(ch11);
    ch11.addChild(ch12);
    ch11.addChild(ch13);

    ch1.addChild(ch14);
    ch6.addChild(ch14);
    ch8.addChild(ch14);
    ch12.addChild(ch14);

    ch14.addChild(m2);
    m2.addChild(ch15);
    ch15.addChild(ch16);
    ch15.addChild(ch17);

    ch17.addChild(ch19);
    ch5.addChild(ch19);

    ch16.addChild(d1);
    d1.addChild(ch18);

    ch19.addChild(m5);
    m5.addChild(ch20);
    ch20.addChild(ch21);
    ch20.addChild(ch22);

    ch13.addChild(ch23);
    ch21.addChild(ch23);

    ch23.addChild(h5);
    h5.addChild(ch24);

    ch18.addChild(ch25);
    ch24.addChild(ch25);
    ch22.addChild(ch25);

    ch25.addChild(m4);
    m4.addChild(ch26);
    ch26.addChild(ch27);
    ch26.addChild(ch28);

    ch27.addChild(h2);
    h2.addChild(ch29);

    ch29.addChild(ch30);
    ch28.addChild(ch30);

    ch30.addChild(m1);
    m1.addChild(ch31);

    ch31.addChild(ch32);
    ch31.addChild(ch33);

    ch32.addChild(m3);
    m3.addChild(ch34);

    ch34.addChild(ch35);
    ch33.addChild(ch35);

    ch35.addChild(d5);

    d5.addChild(ch36);
    ch36.addChild(s0);
    return chlist;
  }

  public static List<Channel> getNlocS4() {

    // channel(name, psteps, hsteps)
    Channel ch1 = new Channel("ch1",1,1);
    Channel ch2 = new Channel("ch2",1,1);
    Channel ch3 = new Channel("ch3",1,1);
    Channel ch4 = new Channel("ch4",1,1);
    Channel ch5 = new Channel("ch5",1,1);
    Channel ch6 = new Channel("ch6",1,1);
    Channel ch7 = new Channel("ch7",1,1);
    Channel ch8 = new Channel("ch8",3,3);
    Channel ch9 = new Channel("ch9",1,1);
    Channel ch10 = new Channel("ch10",1,1);
    Channel ch11 = new Channel("ch11",1,1);
    Channel ch12 = new Channel("ch12",3,3);
    Channel ch13 = new Channel("ch13",1,1);
    Channel ch14 = new Channel("ch14",1,1);
    Channel ch15 = new Channel("ch15",1,1);
    Channel ch16 = new Channel("ch16",3,3);
    Channel ch17 = new Channel("ch17",1,1);
    Channel ch18 = new Channel("ch18",1,1);
    Channel ch19 = new Channel("ch19",1,1);
    Channel ch20 = new Channel("ch20",1,1);
    Channel ch21 = new Channel("ch21",1,1);
    Channel ch22 = new Channel("ch22",3,3);
    Channel ch23 = new Channel("ch23",3,3);
    Channel ch24 = new Channel("ch24",1,1);
    Channel ch25 = new Channel("ch25",1,1);
    Channel ch26 = new Channel("ch26",1,1);
    Channel ch27 = new Channel("ch27",1,1);
    Channel ch28 = new Channel("ch28",1,1);
    Channel ch29 = new Channel("ch29",1,1);
    Channel ch30 = new Channel("ch30",3,3);
    Channel ch31 = new Channel("ch31",1,1);
    Channel ch32 = new Channel("ch32",1,1);
    Channel ch33 = new Channel("ch33",1,1);
    Channel ch34 = new Channel("ch34",1,1);
    Channel ch35 = new Channel("ch35",1,1);
    Channel ch36 = new Channel("ch36",1,1);
    Channel ch37 = new Channel("ch37",3,3);
    Channel ch38 = new Channel("ch38",1,1);
    Channel ch39 = new Channel("ch39",1,1);
    Channel ch40 = new Channel("ch40",3,3);
    Channel ch41 = new Channel("ch41",1,1);
    Channel ch42 = new Channel("ch42",1,1);
    Channel ch43 = new Channel("ch43",1,1);
    Channel ch44 = new Channel("ch44",1,1);
    Channel ch45 = new Channel("ch45",1,1);
    Channel ch46 = new Channel("ch46",1,1);

    Module m0 = new Module("m0", 5,1);
    Module m1 = new Module("m1", 5,1);
    Module m2 = new Module("m2", 5,1);
    Module m3 = new Module("m3", 5,1);
    Module m4 = new Module("m4", 5,1);
    Module m5 = new Module("m5", 5,1);
    Module m6 = new Module("m6", 5,1);

    Module h1 = new Module("h1", 5,1);
    Module h2 = new Module("h2", 5,1);
    Module h6 = new Module("h6", 5,1);

    Module d0 = new Module("d0", 5,1);
    Module d2 = new Module("d2", 5,1);

    Module f1 = new Module("f1", 5,1);
    Module f3 = new Module("f3", 5,1);
    Module f6 = new Module("f6", 5,1);

    Pump p0 = new Pump();
    Sink s0 = new Sink();

    List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7, 
        ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18, ch19,
        ch20, ch21, ch22, ch23, ch24, ch25, ch26, ch27, ch28, ch29, ch30, ch31,
        ch32, ch33, ch34, ch35, ch36, ch37, ch38, ch39, ch40, ch41, ch42, ch43,
        ch44, ch45, ch46, m0, m1, m2, m3, m4, m5, m6, h1, h2, h6, d0, d2, f1, 
        f3, f6, p0, s0);

    p0.addChild(ch1);
    p0.addChild(ch2);
    p0.addChild(ch3);
    p0.addChild(ch4);
    p0.addChild(ch5);

    ch2.addChild(h2);
    h2.addChild(ch6);
    ch6.addChild(ch7);
    ch6.addChild(ch8);

    ch5.addChild(d0);
    d0.addChild(ch9);
    ch9.addChild(ch11);
    ch9.addChild(ch12);

    ch8.addChild(ch10);
    ch3.addChild(ch10);

    ch10.addChild(f3);
    f3.addChild(ch13);
    
    ch13.addChild(ch17);
    ch4.addChild(ch17);
    ch7.addChild(ch17);
    ch15.addChild(ch17);

    ch1.addChild(m2);
    m2.addChild(ch14);
    ch14.addChild(ch15);
    ch14.addChild(ch16);

    ch11.addChild(m1);
    m1.addChild(ch19);

    ch12.addChild(ch20);
    ch22.addChild(ch20);

    ch20.addChild(h6);
    h6.addChild(ch21);
    ch21.addChild(ch23);
    ch21.addChild(ch24);

    ch19.addChild(ch26);
    ch23.addChild(ch26);

    ch17.addChild(m6);
    m6.addChild(ch18);
    ch18.addChild(ch25);
    ch18.addChild(ch22);

    ch25.addChild(ch28);
    ch24.addChild(ch28);

    ch26.addChild(f1);
    f1.addChild(ch32);

    ch28.addChild(m3);
    m3.addChild(ch29);

    ch29.addChild(ch30);
    ch29.addChild(ch33);

    ch33.addChild(ch34);
    ch32.addChild(ch34);

    ch30.addChild(ch27);
    ch16.addChild(ch27);

    ch27.addChild(d2);
    d2.addChild(ch31);
    
    ch34.addChild(m5);
    m5.addChild(ch35);

    ch35.addChild(ch36);
    ch35.addChild(ch37);

    ch31.addChild(ch38);
    ch36.addChild(ch38);

    ch38.addChild(m4);
    m4.addChild(ch39);
    ch39.addChild(ch40);
    ch39.addChild(ch41);

    ch41.addChild(ch43);
    ch37.addChild(ch43);

    ch40.addChild(h1);
    h1.addChild(ch42);

    ch43.addChild(f6);
    f6.addChild(ch44);

    ch42.addChild(ch45);
    ch44.addChild(ch45);

    ch45.addChild(m0);
    m0.addChild(ch46);

    ch46.addChild(s0);
    return chlist;
  }
  public static List<Channel> getNlocS5() {

    // channel(name, psteps, hsteps)
    Channel ch1 = new Channel("ch1",1,1);
    Channel ch2 = new Channel("ch2",1,1);
    Channel ch3 = new Channel("ch3",1,1);
    Channel ch4 = new Channel("ch4",1,1);
    Channel ch5 = new Channel("ch5",1,1);
    Channel ch6 = new Channel("ch6",1,1);
    Channel ch7 = new Channel("ch7",1,1);
    Channel ch8 = new Channel("ch8",3,3);
    Channel ch9 = new Channel("ch9",1,1);
    Channel ch10 = new Channel("ch10",3,3);
    Channel ch11 = new Channel("ch11",1,1);
    Channel ch12 = new Channel("ch12",1,1);
    Channel ch13 = new Channel("ch13",3,3);
    Channel ch14 = new Channel("ch14",1,1);
    Channel ch15 = new Channel("ch15",1,1);
    Channel ch16 = new Channel("ch16",1,1);
    Channel ch17 = new Channel("ch17",1,1);
    Channel ch18 = new Channel("ch18",3,3);
    Channel ch19 = new Channel("ch19",1,1);
    Channel ch20 = new Channel("ch20",1,1);
    Channel ch21 = new Channel("ch21",3,3);
    Channel ch22 = new Channel("ch22",1,1);
    Channel ch23 = new Channel("ch23",1,1);
    Channel ch24 = new Channel("ch24",1,1);
    Channel ch25 = new Channel("ch25",1,1);
    Channel ch26 = new Channel("ch26",3,3);
    Channel ch27 = new Channel("ch27",3,3);
    Channel ch28 = new Channel("ch28",1,1);
    Channel ch29 = new Channel("ch29",1,1);
    Channel ch30 = new Channel("ch30",1,1);
    Channel ch31 = new Channel("ch31",3,3);
    Channel ch32 = new Channel("ch32",1,1);
    Channel ch33 = new Channel("ch33",1,1);
    Channel ch34 = new Channel("ch34",1,1);
    Channel ch35 = new Channel("ch35",1,1);
    Channel ch36 = new Channel("ch36",1,1);
    Channel ch37 = new Channel("ch37",1,1);
    Channel ch38 = new Channel("ch38",3,3);
    Channel ch39 = new Channel("ch39",1,1);
    Channel ch40 = new Channel("ch40",1,1);
    Channel ch41 = new Channel("ch41",3,3);
    Channel ch42 = new Channel("ch42",1,1);
    Channel ch43 = new Channel("ch43",1,1);
    Channel ch44 = new Channel("ch44",1,1);
    Channel ch45 = new Channel("ch45",3,3);
    Channel ch46 = new Channel("ch46",1,1);
    Channel ch47 = new Channel("ch47",1,1);
    Channel ch48 = new Channel("ch48",3,3);
    Channel ch49 = new Channel("ch49",1,1);
    Channel ch50 = new Channel("ch50",1,1);
    Channel ch51 = new Channel("ch51",1,1);
    Channel ch52 = new Channel("ch52",1,1);
    Channel ch53 = new Channel("ch53",1,1);

    Module m0 = new Module("m0", 5,1);
    Module m1 = new Module("m1", 5,1);
    Module m2 = new Module("m2", 5,1);
    Module m3 = new Module("m3", 5,1);
    Module m4 = new Module("m4", 5,1);
    Module m5 = new Module("m5", 5,1);
    Module m6 = new Module("m6", 5,1);

    Module h1 = new Module("h1", 5,1);
    Module h2 = new Module("h2", 5,1);
    Module h4 = new Module("h4", 5,1);
    Module h5 = new Module("h5", 5,1);
    Module h6 = new Module("h6", 5,1);

    Module d0 = new Module("d0", 5,1);
    Module d1 = new Module("d1", 5,1);

    Module f0 = new Module("f0", 5,1);
    Module f1 = new Module("f1", 5,1);
    Module f3 = new Module("f3", 5,1);

    Pump p0 = new Pump();
    Sink s0 = new Sink();

    List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7, 
        ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18, ch19,
        ch20, ch21, ch22, ch23, ch24, ch25, ch26, ch27, ch28, ch29, ch30, ch31,
        ch32, ch33, ch34, ch35, ch36, ch37, ch38, ch39, ch40, ch41, ch42, ch43,
        ch44, ch45, ch46, ch47, ch48, ch49, ch50, ch51, ch52, ch53, m0, m1, m2,
        m3, m4, m5, m6, h1, h2, h4, h5, h6, d0, d1, f0, f1, f3, p0, s0);

    p0.addChild(ch1);
    p0.addChild(ch2);
    p0.addChild(ch3);
    p0.addChild(ch4);

    ch2.addChild(h1);
    h1.addChild(ch5);
    ch5.addChild(ch8);
    ch5.addChild(ch9);

    ch3.addChild(f0);
    f0.addChild(ch6);
    ch6.addChild(ch10);
    ch6.addChild(ch11);

    ch4.addChild(m1);
    m1.addChild(ch7);
    ch7.addChild(ch12);
    ch7.addChild(ch13);

    ch1.addChild(ch14);
    ch8.addChild(ch14);
    ch10.addChild(ch14);

    ch9.addChild(ch15);
    ch11.addChild(ch15);
    ch12.addChild(ch15);

    ch14.addChild(m4);
    m4.addChild(ch16);
    ch16.addChild(ch18);
    ch16.addChild(ch19);

    ch13.addChild(h4);
    h4.addChild(ch17);
    ch17.addChild(ch20);
    ch17.addChild(ch21);

    ch19.addChild(ch22);
    ch20.addChild(ch22);

    ch22.addChild(f3);
    f3.addChild(ch23);
    ch23.addChild(ch25);
    ch23.addChild(ch26);

    ch15.addChild(m2);
    m2.addChild(ch24);
    ch24.addChild(ch27);
    ch24.addChild(ch28);

    ch26.addChild(ch29);
    ch21.addChild(ch29);
    ch27.addChild(ch29);

    ch29.addChild(d0);
    d0.addChild(ch30);
    ch30.addChild(ch31);
    ch30.addChild(ch32);

    ch18.addChild(ch33);
    ch31.addChild(ch33);