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Commit f67f1cd9 authored by Peter Wagenhuber's avatar Peter Wagenhuber
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moegliche tupel sequenzen werden jetzt soweit ich ueberblicken kann richtig... 

moegliche tupel sequenzen werden jetzt soweit ich ueberblicken kann richtig generiert. fiexs #4. jetzt brauchts noch eine liste an moeglichen pump channel belegungen und danach noch die simulation ob das dann eh nicht ineinanderrinnt
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archs/S8Routing.graphml 0 → 100644
+ 476
− 0
View file @ f67f1cd9
This diff is collapsed.
src/Nloc.java
+ 21
− 2
View file @ f67f1cd9
......@@ -179,12 +179,15 @@ public class Nloc {
}
}
//public List<List<SequenceTuple>> getSequencesAtBifurcation(
// List<SequenceTuple> seqTup, SequenceTuple currentSeqTup,
// Channel currentBifurcation) {
public List<List<SequenceTuple>> getSequencesAtBifurcation(
List<SequenceTuple> seqTup, SequenceTuple currentSeqTup,
Channel currentBifurcation) {
List<SequenceTuple> seqTup, Channel currentBifurcation) {
List<List<SequenceTuple>> seqTupList = new ArrayList<List<SequenceTuple>>();
SequenceTuple currentSeqTup = seqTup.get(0);
getSequencesAtBifurcationRecursive(seqTup, currentSeqTup, seqTupList,
currentBifurcation);
......@@ -211,6 +214,8 @@ public class Nloc {
// and add the list of sequence tuples to the possible sequences list
if (dropletPath.contains(currentBifurcation) && prio > 0) {
System.out.println("At last sequence tuple and adding header droplet(s) to: " + currentSeqTup.getDroplet().getName() + ": " + currentSeqTup.getMinPos());
System.out.println("");
// we need header droplet
// cirst check all possible paths of header droplets
......@@ -254,10 +259,17 @@ public class Nloc {
possibleSequences.add(tmp);
}
} else {
System.out.println("At last sequence tuple and NOT adding header droplet(s) to: " + currentSeqTup.getDroplet().getName() + ": " + currentSeqTup.getMinPos());
System.out.println("");
possibleSequences.add(seqTupList);
}
} else {
// TODO
if (dropletPath.contains(currentBifurcation) && prio > 0) {
System.out.println("NOT at last sequence tuple and ");
System.out.println("Adding header droplet(s) to: " + currentSeqTup.getDroplet().getName() + ": " + currentSeqTup.getMinPos());
System.out.println("");
// we need header droplet
// cirst check all possible paths of header droplets
......@@ -303,6 +315,13 @@ public class Nloc {
seqTupList.get(seqTupList.indexOf(currentSeqTup) + 1),
possibleSequences, currentBifurcation);
}
} else {
System.out.println("NOT at last sequence tuple and NOT adding header droplets to: " + currentSeqTup.getDroplet().getName() + ": " + currentSeqTup.getMinPos());
System.out.println("");
getSequencesAtBifurcationRecursive(seqTupList,
seqTupList.get(seqTupList.indexOf(currentSeqTup) + 1),
possibleSequences, currentBifurcation);
}
}
}
......
src/TestNloc.java
+ 207
− 60
View file @ f67f1cd9
......@@ -12,86 +12,52 @@ public class TestNloc {
//Nloc nlSX = new Nloc(getNlocS1());
//Nloc nlSX = new Nloc(getNlocS2());
Nloc nlSX = new Nloc(getNlocS6());
//Nloc nlSX = new Nloc(getNlocS6());
//Nloc nlSX = new Nloc(getNlocS7());
Nloc nlSX = new Nloc(getNlocS8());
// generate list of sequernces
Droplet p = new Droplet(DropletType.PAYLOAD,"p");
//Droplet h1 = new Droplet(DropletType.HEADER,"h1");
//Droplet h2 = new Droplet(DropletType.HEADER,"h2");
//Droplet h3 = new Droplet(DropletType.HEADER,"h3");
List<List<SequenceTuple>> sequences = new ArrayList<List<SequenceTuple>>();
List<List<Channel>> pathlist = nlSX.getAllPaths();
try {
List<Channel> modulesToVisit = nlSX.getModulesByName(Arrays.asList("m4","d1","m1","m3","m0", "m5"));
List<Channel> modulesToVisit = nlSX.getModulesByName(Arrays.asList("m4","d1","m1","m3","h0", "m5"));
List<Channel> payloadPath = nlSX.getDesiredPath(modulesToVisit, pathlist);
//List<Channel> modulesToVisitH1 = nlSX.getModulesByName(Arrays.asList("m4","d1","m1","m3","m0", "m5"));
//List<Channel> h1Path = nlSX.getDesiredPath(modulesToVisitH1, pathlist);
//List<Channel> modulesToVisitH2 = nlSX.getModulesByName(Arrays.asList("m4","m1", "m0", "m5"));
//List<Channel> h2Path = nlSX.getDesiredPath(modulesToVisitH2, pathlist);
//List<Channel> modulesToVisitH3 = nlSX.getModulesByName(Arrays.asList("h3","m1", "m0", "m5"));
//List<Channel> h3Path = nlSX.getDesiredPath(modulesToVisitH3, pathlist);
SequenceTuple plt = new SequenceTuple(p,payloadPath,0,0);
//SequenceTuple h1t = new SequenceTuple(h1,h1Path,-10,-10);
//SequenceTuple h2t = new SequenceTuple(h2,h2Path,-15,-15);
//SequenceTuple h3t = new SequenceTuple(h3,h3Path,-3,-3);
List<SequenceTuple> s1 = new ArrayList<SequenceTuple>();
s1.add(plt);
//List<SequenceTuple> s2 = new ArrayList<SequenceTuple>();
//s2.add(plt); s2.add(h2t);
//List<SequenceTuple> s3 = new ArrayList<SequenceTuple>();
//s3.add(plt); s3.add(h3t);
sequences.add(s1);
//sequences.add(s2);
//sequences.add(s3);
//for (List<SequenceTuple> sl: sequences) {
// for (SequenceTuple stup: sl) {
// System.out.print(stup.getDroplet().getType() + ": " +
// stup.getDroplet().getName() + " -> ");
// }
// System.out.println("");
//}
//
//
//TODO: for every bifurc calculate the list of sequences starting with
// single entry for payload droplet
List<Channel> bifurcationList = nlSX.getBifurcationList(payloadPath);
//System.out.println(bifurcationList);
for (int i = bifurcationList.size() - 1; i >= 0; --i) {
Channel currentBifurcation = bifurcationList.get(i);
List<List<SequenceTuple>> tmpSeqs = new ArrayList<List<SequenceTuple>>();
System.out.println("Bif: " + currentBifurcation.getName());
for (List<SequenceTuple> stl: sequences) {
tmpSeqs.addAll(nlSX.getSequencesAtBifurcation(stl, currentBifurcation));
printSequences(tmpSeqs);
}
sequences = tmpSeqs;
}
//for (List<SequenceTuple> stl: sequences) {
// List<List<SequenceTuple>> newsequences = nlSX.getSequencesAtBifurcation(
// stl, stl.get(0), nlSX.getModuleByName("ch9"));
// }
//}
//List<List<SequenceTuple>> newsequences = nlSXgetSequencesAtBifurcation(
// s1, h1t, nlSX.getModuleByName("ch3"));
//Pump pump = nlSX.getPump();
//Channel ch = nlSX.getModuleByName("ch15");
//List<List<Channel>> pathlist1 = nlSX.getAllPathsFromTo(pump, ch);
//printPaths(pathlist);
//printPath(payloadPath);
//printPaths(pathlist1);
printSequences(sequences);
} catch (Exception e) {
System.out.println( e.getMessage());
}
}
public static void printSequences(List<List<SequenceTuple>> sequences) {
for (List<SequenceTuple> sl: sequences) {
for (SequenceTuple stup: sl) {
if (sl.indexOf(stup) == (sl.size() - 1) {
public static void printSequence(List<SequenceTuple> seq) {
for (SequenceTuple stup: seq) {
if (seq.indexOf(stup) == (seq.size() - 1)) {
System.out.print(stup.getDroplet().getName() + ": " + stup.getMinPos() +
":" + stup.getMaxPos());
} else {
......@@ -102,6 +68,16 @@ public static void printSequences(List<List<SequenceTuple>> sequences) {
System.out.println("\n");
}
public static void printSequences(List<List<SequenceTuple>> sequences) {
System.out.println("##################");
System.out.println("# " + sequences.size() + " Sequences Found");
System.out.println("##################");
System.out.println("");
for (List<SequenceTuple> sl: sequences) {
printSequence(sl);
}
}
public static void printPath(List<Channel> path) {
System.out.println("Pathlength Payload: " + Nloc.getPayloadPathlength(path));
System.out.println("Pathlength Header: " + Nloc.getHeaderPathlength(path));
......@@ -195,7 +171,7 @@ public static void printSequences(List<List<SequenceTuple>> sequences) {
m0.addChild(ch14);
ch14.addChild(d1);
d1.addChild(ch15);
ch15.addChild(s0);
return chlist;
}
......@@ -262,12 +238,12 @@ public static void printSequences(List<List<SequenceTuple>> sequences) {
m4.addChild(ch8);
ch8.addChild(ch11);
ch8.addChild(ch12);
ch12.addChild(d1);
d1.addChild(ch15);
ch2.addChild(ch9);
ch3.addChild(m2);
m2.addChild(ch5);
ch5.addChild(ch6);
......@@ -306,7 +282,7 @@ public static void printSequences(List<List<SequenceTuple>> sequences) {
ch26.addChild(m0);
m0.addChild(ch28);
ch25.addChild(h0);
h0.addChild(ch27);
......@@ -409,4 +385,175 @@ public static void printSequences(List<List<SequenceTuple>> sequences) {
ch20.addChild(s0);
return chlist;
}
public static List<Channel> getNlocS7() {
// channel(name, psteps, hsteps)
Channel ch1 = new Channel("ch1",1,1);
Channel ch2 = new Channel("ch2",1,1);
Channel ch3 = new Channel("ch3",1,1);
Channel ch4 = new Channel("ch4",1,1);
Channel ch5 = new Channel("ch5",1,1);
Channel ch6 = new Channel("ch6",1,1);
Channel ch7 = new Channel("ch7",1,1);
Channel ch8 = new Channel("ch8",3,3);
Channel ch9 = new Channel("ch9",1,1);
Channel ch10 = new Channel("ch10",1,1);
Channel ch11 = new Channel("ch11",1,1);
Channel ch12 = new Channel("ch12",3,3);
Channel ch13 = new Channel("ch13",1,1);
Channel ch14 = new Channel("ch14",1,1);
Channel ch15 = new Channel("ch15",1,1);
Channel ch16 = new Channel("ch16",1,1);
Channel ch17 = new Channel("ch17",1,1);
Channel ch18 = new Channel("ch18",1,1);
Module m0 = new Module("m0", 5,1);
Module m1 = new Module("m1", 5,1);
Module m3 = new Module("m3", 5,1);
Module m4 = new Module("m4", 5,1);
Module m5 = new Module("m5", 5,1);
Module h0 = new Module("h0", 5,1);
Module h3 = new Module("h3", 5,1);
Module d1 = new Module("d1", 5,1);
Pump p0 = new Pump();
Sink s0 = new Sink();
List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7,
ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18,
m0, m1, m3, m4, m5, h0, h3, d1, p0, s0);
p0.addChild(ch1);
p0.addChild(ch2);
ch2.addChild(h3);
h3.addChild(ch4);
ch1.addChild(m4);
m4.addChild(ch3);
ch3.addChild(d1);
d1.addChild(ch5);
ch5.addChild(ch6);
ch4.addChild(ch6);
ch6.addChild(m1);
m1.addChild(ch7);
ch7.addChild(ch8);
ch7.addChild(ch9);
ch8.addChild(ch10);
ch10.addChild(m3);
m3.addChild(ch11);
ch11.addChild(ch12);
ch11.addChild(ch13);
ch13.addChild(ch15);
ch9.addChild(ch15);
ch12.addChild(h0);
h0.addChild(ch14);
ch15.addChild(m0);
m0.addChild(ch16);
ch14.addChild(ch17);
ch16.addChild(ch17);
ch17.addChild(m5);
m5.addChild(ch18);
ch18.addChild(s0);
return chlist;
}
public static List<Channel> getNlocS8() {
// channel(name, psteps, hsteps)
Channel ch1 = new Channel("ch1",1,1);
Channel ch2 = new Channel("ch2",3,3);
Channel ch3 = new Channel("ch3",1,1);
Channel ch4 = new Channel("ch4",1,1);
Channel ch5 = new Channel("ch5",1,1);
Channel ch6 = new Channel("ch6",1,1);
Channel ch7 = new Channel("ch7",1,1);
Channel ch8 = new Channel("ch8",1,1);
Channel ch9 = new Channel("ch9",3,3);
Channel ch10 = new Channel("ch10",1,1);
Channel ch11 = new Channel("ch11",1,1);
Channel ch12 = new Channel("ch12",1,1);
Channel ch13 = new Channel("ch13",3,3);
Channel ch14 = new Channel("ch14",1,1);
Channel ch15 = new Channel("ch15",1,1);
Channel ch16 = new Channel("ch16",1,1);
Channel ch17 = new Channel("ch17",1,1);
Channel ch18 = new Channel("ch18",1,1);
Channel ch19 = new Channel("ch19",1,1);
Module m0 = new Module("m0", 5,1);
Module m1 = new Module("m1", 5,1);
Module m3 = new Module("m3", 5,1);
Module m4 = new Module("m4", 5,1);
Module m5 = new Module("m5", 5,1);
Module h0 = new Module("h0", 5,1);
Module h3 = new Module("h3", 5,1);
Module d1 = new Module("d1", 5,1);
Pump p0 = new Pump();
Sink s0 = new Sink();
List<Channel> chlist = Arrays.asList(ch1, ch2, ch3, ch4, ch5, ch6, ch7,
ch8, ch9, ch10, ch11, ch12, ch13, ch14, ch15, ch16, ch17, ch18, ch19,
m0, m1, m3, m4, m5, h0, h3, d1, p0, s0);
p0.addChild(ch1);
ch1.addChild(ch2);
ch1.addChild(ch3);
ch2.addChild(m4);
m4.addChild(ch4);
ch4.addChild(d1);
d1.addChild(ch6);
ch3.addChild(h3);
h3.addChild(ch5);
ch6.addChild(ch7);
ch5.addChild(ch7);
ch7.addChild(m1);
m1.addChild(ch8);
ch8.addChild(ch9);
ch8.addChild(ch10);
ch9.addChild(ch11);
ch11.addChild(m3);
m3.addChild(ch12);
ch12.addChild(ch13);
ch12.addChild(ch14);
ch13.addChild(h0);
h0.addChild(ch15);
ch10.addChild(ch16);
ch14.addChild(ch16);
ch16.addChild(m0);
m0.addChild(ch17);
ch15.addChild(ch18);
ch17.addChild(ch18);
ch18.addChild(m5);
m5.addChild(ch19);
ch19.addChild(s0);
return chlist;
}
}
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